PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005193.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 343aa    MW: 39590.6 Da    PI: 9.0872
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005193.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.13.4e-141190172
                     FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkek 72
                             +fY++YA +vGF++r s+  ks ++g i ++   Cs+eg+++ + ++         +++++r+r+++r+gCka+++ k  +
  Itr_sc005193.1_g00001.1 11 SFYKSYAAKVGFDIRSSYVMKS-KDGVILSKYILCSREGYKNVTGSStlnvdeassSSTTKRRRVSNRIGCKARIVFKFIE 90
                             5*******************99.8899***************999999******99899999*************998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-111189IPR004330FAR1 DNA binding domain
PfamPF105511.7E-30109200IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MTFSTLDAVV SFYKSYAAKV GFDIRSSYVM KSKDGVILSK YILCSREGYK NVTGSSTLNV  60
DEASSSSTTK RRRVSNRIGC KARIVFKFIE SLGYGRSNFK KEFWLFWDVV SFDATYQTNR  120
YDIVFTSFTG IDNHKKSITF AVGLLTKEDI ASYVWLFEHF KKAMGEEPKV IVTDQDPAMR  180
QAIPAVFNEA RHRFCMWHIM CKVGEKVGSV LSKNEIFRKK LNSIVWSSYL EPLEFENEWR  240
SIMEEFDLVN NNWFEQMFEL RRFWILAYFR DVPMASLLRT TSRSKGMDER KVLLAQLWGD  300
MQCCIGLAKE AKMDKLVEFA QVVVVELMAD HHGQAQVQNG GTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667127.12e-64PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9FHJ05e-58B9FHJ0_ORYSJ; Uncharacterized protein
STRINGLOC_Os05g30720.11e-57(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1268424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-36FAR1-related sequence 5